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Dr. Bakkeren obtained his PhD from ETH Zurich, under the supervision of Dr. Wolf-Dietrich Hardt, investigating the evolution of bacterial pathogens in the gut, using Salmonella Typhimurium as a model system. Following his doctoral studies, Dr. Bakkeren pursued postdoctoral research at the University of Oxford in the lab of Dr. Kevin Foster, focusing on the ecology and evolution of microbial communities, particularly the gut microbiome. In 2025, he initiated his own laboratory at the University of Calgary, where he serves as an Assistant Professor. His research primarily investigates how microbes that colonize the gastrointestinal tract influence various factors such as nutrient extraction, immune system development, and disease protection against pathogenic microbes. The gut microbiome is diverse and highly individualized, making the compositional context crucial for understanding its effects. Dr. Bakkeren aims to discern the mechanisms underlying gut microbiome interactions and their implications for colonization resistance and disease outcomes. His interests also encompass antibiotic resistance and exploring alternative strategies to control harmful bacteria within microbial communities.
University of Calgary • Calgary, AB
Leading research on gut microbiome and its implications for health.
Department of Computer Science Master's program. GRE scores are expected for international students.